I too have a vibration that comes and goes, but is normally there after about 65mph and up. I put on aftermarket 20" Fuel wheels with Goodyear wrangler duratrac 275/60R20 tires that I have had discount tire rebalance 3 times now to try and rid the vibration. I put those on shortly after buying the truck, along with a 2.5" RC level. I don't recall having a vibration with the factory tires/wheels, but I am going to re-mount them and see if it happens to rule out a wheel balancing issue.
The truck only has 7k miles..