Well I finally got some free time and got the intake back off this morning, and it seems that the knock sensors were a little loose. They were only torqued to about 8-10 ft/lbs so I tightened them down to 15 ft/lbs, used di-electric grease on the connectors, and put the RTV on each of the boots and where the wires go into them. I would have replaced the aftermarket sensors with some AC Delco or Delphi but the only place around here that had either wanted $90 per sensor, and I cant afford nor do I see spending that much on them when I can get them off eBay or from RockAuto for less than that for both. Plus I have to leave town and need my truck tomorrow so I'm going to let the RTV set overnight and hope for the best on the road trip tomorrow. If I'm still having problems I'll take it in somewhere that has a better scanner than me and see what's really going on. Thanks for all the suggestions. Wish me luck.