I got the updated part installed last Thursday and removed the previously installed diode and did a 200+ mile drive with ZERO issues. Looks like the updated brake controller finally fixed the issue.
For the sake of everyone reading, there were 2 solid solutions that worked without issue, and 1 potential solution.
Solution 1: Installed Diode on the 12v charge wire (Black) from the Truck to trailer. This prevented all back feeding and worked for long drives without issue.
Solution 2: GM installed new Brake Controller. Took them less then 1 hour for the install. They did have to order the part which took a couple days. Was fully covered by warranty.
Ideal Alternative Solution until you get GM installed updated Brake Controller: I purchased the Curt Echo Mobile Bluetooth brake controller. This is put inline with the trailer plug and bypasses the trucks brake controller. You can control sensitivity and gain using a mobile app, and can even have a manual brake button on the phone. I drove 2k+ miles using this setup. I was very annoyed that I needed to use this adapter on a brand new 2024 3500 GMC, and lost the ability to control gain and manual braking with the in-truck controls, but it was better to have reliable brakes when I was going through a lot of mountains.
Potential Solution: I attempted a drive with all 12v accessories turned on in the trailer while driving. Fans, Lights, Fridge, etc. This was an attempt to keep the charge on the batteries low enough that the back feeding would not occur. It worked for about an hour before the 550watts of solar was charging faster then the usage. This may be a viable solution for trailers with little or no solar.