Wow, so this brake job saga is finally over. I replaced the master cylinder, ABS unit, rotors, pads, calipers, drums, shoes, springs, and wheel cylinders. I would get a solid pedal when it was up on jacks but as soon as I started driving the pedal would drop down and start pulsating. I wasn't getting any check lights, and I bled the entire system and bench bled the master cylinder multiple times, but every time I would get on the road the pedal would pulsate up and down as soon as I pressed it.
Well I finally figured out what was wrong after weeks of working on this thing. The dirty brake fluid didn't just destroy the rubber in the wheel cylinders, it also started eating up the rubber flex lines from the inside. They got so weak that as soon as I would apply the brake and build pressure in the lines they would start expanding and collapsing. The fluctuation of pressure in the lines would make the pedal pulsate up and down. After changing all of the flex lines I got a solid braking system.