But since i have a charge wire connecting batt1 and batt2, they should both see the same voltage. Right? So in theory, if I was pulling alot of power for the stereo, batt2 to the amps, the charge cable connected to batt1 and batt2 should equal out voltages between the 2 batts., then the alt would sense the lower voltage, and adjust charging amperage.
If i did not have a cable from batt1 to batt2, then i would agree with you because then the alt really wouldnt know how to charge batt2. It would really only charge accordingly to what batt1 would require.