If you go to S&B's website and locate the intake for your truck, there will be a link to an install video. At the end of the video they show how to navigate your driver info menu to disable the air filter monitoring system. After I did that I haven't gotten any error messages regarding my intake.
I did that initially, and I just repeated the process last night. I disconnected the battery for 3+ hours, but when I went to the air filter monitoring system, I now do not have an option to disable it... It only shows up red and says "check system".